J3_7SSO_003

3D structure

PDB id

7SSO (explore in PDB, NAKB, or RNA 3D Hub)

Description

Pre translocation 70S ribosome with A/A and P/E tRNA (Structure II-A)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.2 Å

Loop

Sequence

UGAUCUA*UGG*CAAA

Length

14 nucleotides

Bulged bases

7SSO|1|1|U|686, 7SSO|1|1|A|792

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_7SSO_003 not in the Motif Atlas

Homologous match to J3_7RQB_004

Geometric discrepancy: 0.3338

The information below is about J3_7RQB_004

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_39238.4

Basepair signature

cWW-tWH-cWW-tSW-F-F-cWW

Number of instances in this motif group

7

Unit IDs

7SSO|1|1|U|683
7SSO|1|1|G|684
7SSO|1|1|A|685
7SSO|1|1|U|686
7SSO|1|1|C|687
7SSO|1|1|U|688
7SSO|1|1|A|689
*
7SSO|1|1|U|773
7SSO|1|1|G|774
7SSO|1|1|G|775
*
7SSO|1|1|C|791
7SSO|1|1|A|792
7SSO|1|1|A|793
7SSO|1|1|A|794

Current chains

Chain 1

23S rRNA

Nearby chains

Chain D

50S ribosomal protein L34

Chain b

50S ribosomal protein L2