J3_7ST7_003

3D structure

PDB id

7ST7 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Pre translocation intermediate stalled with viomycin and bound with EF-G in a GDP and Pi state (Structure III-vio)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.2 Å

Loop

Sequence

UGAUCUA*UGG*CAAA

Length

14 nucleotides

Bulged bases

7ST7|1|1|U|686, 7ST7|1|1|A|792

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_7ST7_003 not in the Motif Atlas

Homologous match to J3_7RQB_004

Geometric discrepancy: 0.1989

The information below is about J3_7RQB_004

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_39238.4

Basepair signature

cWW-tWH-cWW-tSW-F-F-cWW

Number of instances in this motif group

7

Unit IDs

7ST7|1|1|U|683
7ST7|1|1|G|684
7ST7|1|1|A|685
7ST7|1|1|U|686
7ST7|1|1|C|687
7ST7|1|1|U|688
7ST7|1|1|A|689
*
7ST7|1|1|U|773
7ST7|1|1|G|774
7ST7|1|1|G|775
*
7ST7|1|1|C|791
7ST7|1|1|A|792
7ST7|1|1|A|793
7ST7|1|1|A|794

Current chains

Chain 1

23S rRNA

Nearby chains

Chain D

50S ribosomal protein L34

Chain b

50S ribosomal protein L2