3D structure

PDB id
7ST7 (explore in PDB, NAKB, or RNA 3D Hub)
Description
Pre translocation intermediate stalled with viomycin and bound with EF-G in a GDP and Pi state (Structure III-vio)
Experimental method
ELECTRON MICROSCOPY
Resolution
3.2 Å

Loop

Sequence
UUUAAUUC*GAAGAACCUUAC*GGCUA
Length
25 nucleotides
Bulged bases
7ST7|1|3|A|958, 7ST7|1|3|A|975, 7ST7|1|3|G|976, 7ST7|1|3|A|978
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
J3_7ST7_020 not in the Motif Atlas
Homologous match to J3_5J7L_006
Geometric discrepancy: 0.0962
The information below is about J3_5J7L_006
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
J3_83516.4
Basepair signature
cWW-tWW-F-F-F-F-F-tSS-cWW-F-F-cWW-F-F-F-F-F-F
Number of instances in this motif group
4

Unit IDs

7ST7|1|3|U|955
7ST7|1|3|U|956
7ST7|1|3|U|957
7ST7|1|3|A|958
7ST7|1|3|A|959
7ST7|1|3|U|960
7ST7|1|3|U|961
7ST7|1|3|C|962
*
7ST7|1|3|G|973
7ST7|1|3|A|974
7ST7|1|3|A|975
7ST7|1|3|G|976
7ST7|1|3|A|977
7ST7|1|3|A|978
7ST7|1|3|C|979
7ST7|1|3|C|980
7ST7|1|3|U|981
7ST7|1|3|U|982
7ST7|1|3|A|983
7ST7|1|3|C|984
*
7ST7|1|3|G|1221
7ST7|1|3|G|1222
7ST7|1|3|C|1223
7ST7|1|3|U|1224
7ST7|1|3|A|1225

Current chains

Chain 3
16S rRNA

Nearby chains

Chain 5
Transfer RNA; tRNA
Chain N
30S ribosomal protein S9
Chain O
30S ribosomal protein S10
Chain R
30S ribosomal protein S13
Chain S
30S ribosomal protein S14
Chain X
30S ribosomal protein S19

Coloring options:


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