J3_7ST7_029
3D structure
- PDB id
- 7ST7 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Pre translocation intermediate stalled with viomycin and bound with EF-G in a GDP and Pi state (Structure III-vio)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.2 Å
Loop
- Sequence
- UCGACCC*GGAAA*UA
- Length
- 14 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_7ST7_029 not in the Motif Atlas
- Homologous match to J3_9DFE_012
- Geometric discrepancy: 0.5551
- The information below is about J3_9DFE_012
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_31965.2
- Basepair signature
- cWW-F-cWW-F-F-F-F-F-cWW-F
- Number of instances in this motif group
- 6
Unit IDs
7ST7|1|1|U|1344
7ST7|1|1|C|1345
7ST7|1|1|G|1346
7ST7|1|1|A|1347
7ST7|1|1|C|1348
7ST7|1|1|C|1349
7ST7|1|1|C|1350
*
7ST7|1|1|G|1381
7ST7|1|1|G|1382
7ST7|1|1|A|1383
7ST7|1|1|A|1384
7ST7|1|1|A|1385
*
7ST7|1|1|U|1402
7ST7|1|1|A|1403
Current chains
- Chain 1
- 23S rRNA
Nearby chains
- Chain t
- 50S ribosomal protein L23
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