J3_7SYG_001

3D structure

PDB id

7SYG (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the HCV IRES binding to the 40S ribosomal subunit, closed conformation. Structure 1(delta dII)

Experimental method

ELECTRON MICROSCOPY

Resolution

4.3 Å

Loop

Sequence

AG*CGCAAAU*AGU

Length

12 nucleotides

Bulged bases

7SYG|1|2|C|483

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_7SYG_001 not in the Motif Atlas

Geometric match to J3_4V88_078

Geometric discrepancy: 0.1976

The information below is about J3_4V88_078

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_67856.1

Basepair signature

cWW-F-cWW-F-F-cSW-F-cWW

Number of instances in this motif group

5

Unit IDs

7SYG|1|2|A|40
7SYG|1|2|G|41
*
7SYG|1|2|C|481
7SYG|1|2|G|482
7SYG|1|2|C|483
7SYG|1|2|A|484
7SYG|1|2|A|485
7SYG|1|2|A|486
7SYG|1|2|U|487
*
7SYG|1|2|A|512
7SYG|1|2|G|513
7SYG|1|2|U|514

Current chains

Chain 2

18S rRNA

Nearby chains

Chain K

uS4

Chain Y

uS12