J3_7SYG_009

3D structure

PDB id

7SYG (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the HCV IRES binding to the 40S ribosomal subunit, closed conformation. Structure 1(delta dII)

Experimental method

ELECTRON MICROSCOPY

Resolution

4.3 Å

Loop

Sequence

CGGAC*GGGUG*UUAGAUG

Length

17 nucleotides

Bulged bases

7SYG|1|2|G|1507

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_7SYG_009 not in the Motif Atlas

Homologous match to J3_8CRE_081

Geometric discrepancy: 0.5969

The information below is about J3_8CRE_081

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_87797.2

Basepair signature

cWW-tWH-F-F-tHS-cWW-cWW-cWW-F

Number of instances in this motif group

3

Unit IDs

7SYG|1|2|C|1273
7SYG|1|2|G|1274
7SYG|1|2|G|1275
7SYG|1|2|A|1276
7SYG|1|2|C|1277
*
7SYG|1|2|G|1320
7SYG|1|2|G|1321
7SYG|1|2|G|1322
7SYG|1|2|U|1323
7SYG|1|2|G|1324
*
7SYG|1|2|U|1504
7SYG|1|2|U|1505
7SYG|1|2|A|1506
7SYG|1|2|G|1507
7SYG|1|2|A|1508
7SYG|1|2|U|1509
7SYG|1|2|G|1510

Current chains

Chain 2

18S rRNA

Nearby chains

Chain L

eS10

Chain e

eS29

Chain g

40S ribosomal protein S27a