J3_7SYH_009

3D structure

PDB id

7SYH (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the HCV IRES binding to the 40S ribosomal subunit, closed conformation. Structure 2(delta dII)

Experimental method

ELECTRON MICROSCOPY

Resolution

4.6 Å

Loop

Sequence

UCUUAGUU*AACGAGAC*GCAAUAA

Length

23 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

7SYH|1|2|U|1340
7SYH|1|2|C|1341
7SYH|1|2|U|1342
7SYH|1|2|U|1343
7SYH|1|2|A|1344
7SYH|1|2|G|1345
7SYH|1|2|U|1346
7SYH|1|2|U|1347
*
7SYH|1|2|A|1382
7SYH|1|2|A|1383
7SYH|1|2|C|1384
7SYH|1|2|G|1385
7SYH|1|2|A|1386
7SYH|1|2|G|1387
7SYH|1|2|A|1388
7SYH|1|2|C|1389
*
7SYH|1|2|G|1481
7SYH|1|2|C|1482
7SYH|1|2|A|1483
7SYH|1|2|A|1484
7SYH|1|2|U|1485
7SYH|1|2|A|1486
7SYH|1|2|A|1487

Current chains

Chain 2

18S rRNA

Nearby chains

Chain D

uS5 (S2)

Chain E

uS3

Chain R

uS9

Chain S

eS17

Chain V

uS10

Chain e

eS29