J3_7SYH_011

3D structure

PDB id

7SYH (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the HCV IRES binding to the 40S ribosomal subunit, closed conformation. Structure 2(delta dII)

Experimental method

ELECTRON MICROSCOPY

Resolution

4.6 Å

Loop

Sequence

CACUG*CGUGAUGG*CGAG

Length

17 nucleotides

Bulged bases

7SYH|1|2|U|1535, 7SYH|1|2|G|1603

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

7SYH|1|2|C|1532
7SYH|1|2|A|1533
7SYH|1|2|C|1534
7SYH|1|2|U|1535
7SYH|1|2|G|1536
*
7SYH|1|2|C|1597
7SYH|1|2|G|1598
7SYH|1|2|U|1599
7SYH|1|2|G|1600
7SYH|1|2|A|1601
7SYH|1|2|U|1602
7SYH|1|2|G|1603
7SYH|1|2|G|1604
*
7SYH|1|2|C|1635
7SYH|1|2|G|1636
7SYH|1|2|A|1637
7SYH|1|2|G|1638

Current chains

Chain 2

18S rRNA

Nearby chains

Chain G

uS7

Chain T

uS13

Chain U

eS19

Chain a

40S ribosomal protein S25