J3_7SYH_013

3D structure

PDB id

7SYH (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the HCV IRES binding to the 40S ribosomal subunit, closed conformation. Structure 2(delta dII)

Experimental method

ELECTRON MICROSCOPY

Resolution

4.6 Å

Loop

Sequence

CAAAG*CGCAAAU*AGUGACG

Length

19 nucleotides

Bulged bases

7SYH|1|2|A|516

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

7SYH|1|2|C|37
7SYH|1|2|A|38
7SYH|1|2|A|39
7SYH|1|2|A|40
7SYH|1|2|G|41
*
7SYH|1|2|C|481
7SYH|1|2|G|482
7SYH|1|2|C|483
7SYH|1|2|A|484
7SYH|1|2|A|485
7SYH|1|2|A|486
7SYH|1|2|U|487
*
7SYH|1|2|A|512
7SYH|1|2|G|513
7SYH|1|2|U|514
7SYH|1|2|G|515
7SYH|1|2|A|516
7SYH|1|2|C|517
7SYH|1|2|G|518

Current chains

Chain 2

18S rRNA

Nearby chains

Chain F

40S ribosomal protein S4

Chain K

uS4

Chain Y

uS12

Chain Z

40S ribosomal protein S24