J3_7SYH_015

3D structure

PDB id

7SYH (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the HCV IRES binding to the 40S ribosomal subunit, closed conformation. Structure 2(delta dII)

Experimental method

ELECTRON MICROSCOPY

Resolution

4.6 Å

Loop

Sequence

CUGGC*GGACAAG*CCCGAGAUUG

Length

22 nucleotides

Bulged bases

7SYH|1|2|A|1454, 7SYH|1|2|U|1477

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

7SYH|1|2|C|1391
7SYH|1|2|U|1392
7SYH|1|2|G|1393
7SYH|1|2|G|1394
7SYH|1|2|C|1395
*
7SYH|1|2|G|1450
7SYH|1|2|G|1451
7SYH|1|2|A|1452
7SYH|1|2|C|1453
7SYH|1|2|A|1454
7SYH|1|2|A|1455
7SYH|1|2|G|1456
*
7SYH|1|2|C|1470
7SYH|1|2|C|1471
7SYH|1|2|C|1472
7SYH|1|2|G|1473
7SYH|1|2|A|1474
7SYH|1|2|G|1475
7SYH|1|2|A|1476
7SYH|1|2|U|1477
7SYH|1|2|U|1478
7SYH|1|2|G|1479

Current chains

Chain 2

18S rRNA

Nearby chains

Chain E

uS3

Chain G

uS7

Chain R

uS9

Chain S

eS17

Chain V

uS10

Chain d

eS28

Chain e

eS29

Chain h

RACK1