J3_7SYI_012

3D structure

PDB id

7SYI (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the HCV IRES binding to the 40S ribosomal subunit, closed conformation. Structure 3(delta dII)

Experimental method

ELECTRON MICROSCOPY

Resolution

4.5 Å

Loop

Sequence

CUGGC*GGACAAG*CCCGAGAUUG

Length

22 nucleotides

Bulged bases

7SYI|1|2|U|1477

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

7SYI|1|2|C|1391
7SYI|1|2|U|1392
7SYI|1|2|G|1393
7SYI|1|2|G|1394
7SYI|1|2|C|1395
*
7SYI|1|2|G|1450
7SYI|1|2|G|1451
7SYI|1|2|A|1452
7SYI|1|2|C|1453
7SYI|1|2|A|1454
7SYI|1|2|A|1455
7SYI|1|2|G|1456
*
7SYI|1|2|C|1470
7SYI|1|2|C|1471
7SYI|1|2|C|1472
7SYI|1|2|G|1473
7SYI|1|2|A|1474
7SYI|1|2|G|1475
7SYI|1|2|A|1476
7SYI|1|2|U|1477
7SYI|1|2|U|1478
7SYI|1|2|G|1479

Current chains

Chain 2

18S rRNA

Nearby chains

Chain E

uS3

Chain G

uS7

Chain R

uS9

Chain S

eS17

Chain V

uS10

Chain d

eS28

Chain e

eS29

Chain h

RACK1