J3_7SYI_016

3D structure

PDB id

7SYI (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the HCV IRES binding to the 40S ribosomal subunit, closed conformation. Structure 3(delta dII)

Experimental method

ELECTRON MICROSCOPY

Resolution

4.5 Å

Loop

Sequence

CUUAAUUUG*CGGGAAACCUCAC*GGCUG

Length

27 nucleotides

Bulged bases

7SYI|1|2|G|1256, 7SYI|1|2|A|1258

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

7SYI|1|2|C|1237
7SYI|1|2|U|1238
7SYI|1|2|U|1239
7SYI|1|2|A|1240
7SYI|1|2|A|1241
7SYI|1|2|U|1242
7SYI|1|2|U|1243
7SYI|1|2|U|1244
7SYI|1|2|G|1245
*
7SYI|1|2|C|1254
7SYI|1|2|G|1255
7SYI|1|2|G|1256
7SYI|1|2|G|1257
7SYI|1|2|A|1258
7SYI|1|2|A|1259
7SYI|1|2|A|1260
7SYI|1|2|C|1261
7SYI|1|2|C|1262
7SYI|1|2|U|1263
7SYI|1|2|C|1264
7SYI|1|2|A|1265
7SYI|1|2|C|1266
*
7SYI|1|2|G|1516
7SYI|1|2|G|1517
7SYI|1|2|C|1518
7SYI|1|2|U|1519
7SYI|1|2|G|1520

Current chains

Chain 2

18S rRNA

Nearby chains

Chain Q

uS19

Chain R

uS9

Chain T

uS13

Chain V

uS10

Chain e

eS29