J3_7SYJ_005

3D structure

PDB id

7SYJ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the HCV IRES binding to the 40S ribosomal subunit, closed conformation. Structure 4(delta dII)

Experimental method

ELECTRON MICROSCOPY

Resolution

4.8 Å

Loop

Sequence

CCGG*CUUCCG*CAAAG

Length

15 nucleotides

Bulged bases

7SYJ|1|2|C|1138

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

7SYJ|1|2|C|1094
7SYJ|1|2|C|1095
7SYJ|1|2|G|1096
7SYJ|1|2|G|1097
*
7SYJ|1|2|C|1135
7SYJ|1|2|U|1136
7SYJ|1|2|U|1137
7SYJ|1|2|C|1138
7SYJ|1|2|C|1139
7SYJ|1|2|G|1140
*
7SYJ|1|2|C|1147
7SYJ|1|2|A|1148
7SYJ|1|2|A|1149
7SYJ|1|2|A|1150
7SYJ|1|2|G|1151

Current chains

Chain 2

18S rRNA

Nearby chains

Chain B

40S ribosomal protein SA

Chain O

uS15

Chain W

40S ribosomal protein S21

Chain X

uS8

Chain b

eS26 (S26)

Chain c

eS27