J3_7SYJ_009

3D structure

PDB id

7SYJ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the HCV IRES binding to the 40S ribosomal subunit, closed conformation. Structure 4(delta dII)

Experimental method

ELECTRON MICROSCOPY

Resolution

4.8 Å

Loop

Sequence

CGGAC*GGGUG*UUAGAUG

Length

17 nucleotides

Bulged bases

7SYJ|1|2|G|1507

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

7SYJ|1|2|C|1273
7SYJ|1|2|G|1274
7SYJ|1|2|G|1275
7SYJ|1|2|A|1276
7SYJ|1|2|C|1277
*
7SYJ|1|2|G|1320
7SYJ|1|2|G|1321
7SYJ|1|2|G|1322
7SYJ|1|2|U|1323
7SYJ|1|2|G|1324
*
7SYJ|1|2|U|1504
7SYJ|1|2|U|1505
7SYJ|1|2|A|1506
7SYJ|1|2|G|1507
7SYJ|1|2|A|1508
7SYJ|1|2|U|1509
7SYJ|1|2|G|1510

Current chains

Chain 2

18S rRNA

Nearby chains

Chain L

eS10

Chain e

eS29

Chain g

40S ribosomal protein S27a