J3_7SYJ_010

3D structure

PDB id

7SYJ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the HCV IRES binding to the 40S ribosomal subunit, closed conformation. Structure 4(delta dII)

Experimental method

ELECTRON MICROSCOPY

Resolution

4.8 Å

Loop

Sequence

UCUUAGUU*AACGAGAC*GCAAUAA

Length

23 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

7SYJ|1|2|U|1340
7SYJ|1|2|C|1341
7SYJ|1|2|U|1342
7SYJ|1|2|U|1343
7SYJ|1|2|A|1344
7SYJ|1|2|G|1345
7SYJ|1|2|U|1346
7SYJ|1|2|U|1347
*
7SYJ|1|2|A|1382
7SYJ|1|2|A|1383
7SYJ|1|2|C|1384
7SYJ|1|2|G|1385
7SYJ|1|2|A|1386
7SYJ|1|2|G|1387
7SYJ|1|2|A|1388
7SYJ|1|2|C|1389
*
7SYJ|1|2|G|1481
7SYJ|1|2|C|1482
7SYJ|1|2|A|1483
7SYJ|1|2|A|1484
7SYJ|1|2|U|1485
7SYJ|1|2|A|1486
7SYJ|1|2|A|1487

Current chains

Chain 2

18S rRNA

Nearby chains

Chain B

40S ribosomal protein SA

Chain D

uS5 (S2)

Chain E

uS3

Chain R

uS9

Chain S

eS17

Chain V

uS10

Chain e

eS29