J3_7SYJ_013

3D structure

PDB id

7SYJ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the HCV IRES binding to the 40S ribosomal subunit, closed conformation. Structure 4(delta dII)

Experimental method

ELECTRON MICROSCOPY

Resolution

4.8 Å

Loop

Sequence

GAG*CUGCCUGAUAGGGUG*CC

Length

20 nucleotides

Bulged bases

7SYJ|1|z|G|295

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

7SYJ|1|z|G|133
7SYJ|1|z|A|134
7SYJ|1|z|G|135
*
7SYJ|1|z|C|289
7SYJ|1|z|U|290
7SYJ|1|z|G|291
7SYJ|1|z|C|292
7SYJ|1|z|C|293
7SYJ|1|z|U|294
7SYJ|1|z|G|295
7SYJ|1|z|A|296
7SYJ|1|z|U|297
7SYJ|1|z|A|298
7SYJ|1|z|G|299
7SYJ|1|z|G|300
7SYJ|1|z|G|301
7SYJ|1|z|U|302
7SYJ|1|z|G|303
*
7SYJ|1|z|C|314
7SYJ|1|z|C|315

Current chains

Chain z

HCV IRES

Nearby chains

Chain 2

Small subunit ribosomal RNA; SSU rRNA

Chain C

eS1

Chain S

eS17