J3_7SYJ_014
3D structure
- PDB id
- 7SYJ (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of the HCV IRES binding to the 40S ribosomal subunit, closed conformation. Structure 4(delta dII)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 4.8 Å
Loop
- Sequence
- UGG*UAAGAG*CAUUA
- Length
- 14 nucleotides
- Bulged bases
- 7SYJ|1|2|G|921
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_7SYJ_014 not in the Motif Atlas
- Homologous match to J3_8P9A_072
- Geometric discrepancy: 0.2306
- The information below is about J3_8P9A_072
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_17385.4
- Basepair signature
- cWW-F-cWW-cWW-tWH-tHS-cWW
- Number of instances in this motif group
- 6
Unit IDs
7SYJ|1|2|U|682
7SYJ|1|2|G|683
7SYJ|1|2|G|684
*
7SYJ|1|2|U|918
7SYJ|1|2|A|919
7SYJ|1|2|A|920
7SYJ|1|2|G|921
7SYJ|1|2|A|922
7SYJ|1|2|G|923
*
7SYJ|1|2|C|1019
7SYJ|1|2|A|1020
7SYJ|1|2|U|1021
7SYJ|1|2|U|1022
7SYJ|1|2|A|1023
Current chains
- Chain 2
- 18S rRNA
Nearby chains
- Chain I
- 40S ribosomal protein S7
- Chain M
- uS17
- Chain O
- uS15
- Chain X
- uS8
- Chain Y
- uS12
- Chain c
- eS27
Coloring options: