J3_7SYJ_017

3D structure

PDB id

7SYJ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the HCV IRES binding to the 40S ribosomal subunit, closed conformation. Structure 4(delta dII)

Experimental method

ELECTRON MICROSCOPY

Resolution

4.8 Å

Loop

Sequence

CUGGC*GGACAAG*CCCGAGAUUG

Length

22 nucleotides

Bulged bases

7SYJ|1|2|C|1453, 7SYJ|1|2|U|1477

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

7SYJ|1|2|C|1391
7SYJ|1|2|U|1392
7SYJ|1|2|G|1393
7SYJ|1|2|G|1394
7SYJ|1|2|C|1395
*
7SYJ|1|2|G|1450
7SYJ|1|2|G|1451
7SYJ|1|2|A|1452
7SYJ|1|2|C|1453
7SYJ|1|2|A|1454
7SYJ|1|2|A|1455
7SYJ|1|2|G|1456
*
7SYJ|1|2|C|1470
7SYJ|1|2|C|1471
7SYJ|1|2|C|1472
7SYJ|1|2|G|1473
7SYJ|1|2|A|1474
7SYJ|1|2|G|1475
7SYJ|1|2|A|1476
7SYJ|1|2|U|1477
7SYJ|1|2|U|1478
7SYJ|1|2|G|1479

Current chains

Chain 2

18S rRNA

Nearby chains

Chain E

uS3

Chain G

uS7

Chain R

uS9

Chain S

eS17

Chain V

uS10

Chain d

eS28

Chain e

eS29

Chain h

RACK1