J3_7SYN_005

3D structure

PDB id

7SYN (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the HCV IRES bound to the 40S ribosomal subunit, head opening. Structure 8(delta dII)

Experimental method

ELECTRON MICROSCOPY

Resolution

4 Å

Loop

Sequence

CCG*UUCCG*CAAAG

Length

13 nucleotides

Bulged bases

7SYN|1|2|C|1138, 7SYN|1|2|A|1150

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

7SYN|1|2|C|1094
7SYN|1|2|C|1095
7SYN|1|2|G|1096
*
7SYN|1|2|U|1136
7SYN|1|2|U|1137
7SYN|1|2|C|1138
7SYN|1|2|C|1139
7SYN|1|2|G|1140
*
7SYN|1|2|C|1147
7SYN|1|2|A|1148
7SYN|1|2|A|1149
7SYN|1|2|A|1150
7SYN|1|2|G|1151

Current chains

Chain 2

18S rRNA

Nearby chains

Chain B

uS2 (SA)

Chain W

eS21

Chain X

uS8

Chain b

eS26

Chain c

eS27