J3_7SYO_016
3D structure
- PDB id
- 7SYO (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of the HCV IRES bound to the 40S ribosomal subunit, head open. Structure 9(delta dII)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 4.6 Å
Loop
- Sequence
- CUUAAUUU*GGGAAACCUCAC*GGCUG
- Length
- 25 nucleotides
- Bulged bases
- 7SYO|1|2|G|1256, 7SYO|1|2|A|1258
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_7SYO_016 not in the Motif Atlas
- Homologous match to J3_8CRE_080
- Geometric discrepancy: 0.1684
- The information below is about J3_8CRE_080
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_88451.1
- Basepair signature
- cWW-tWW-F-F-F-F-F-tSS-cWW-F-F-cWW-F-F-F-F-F-F
- Number of instances in this motif group
- 5
Unit IDs
7SYO|1|2|C|1237
7SYO|1|2|U|1238
7SYO|1|2|U|1239
7SYO|1|2|A|1240
7SYO|1|2|A|1241
7SYO|1|2|U|1242
7SYO|1|2|U|1243
7SYO|1|2|U|1244
*
7SYO|1|2|G|1255
7SYO|1|2|G|1256
7SYO|1|2|G|1257
7SYO|1|2|A|1258
7SYO|1|2|A|1259
7SYO|1|2|A|1260
7SYO|1|2|C|1261
7SYO|1|2|C|1262
7SYO|1|2|U|1263
7SYO|1|2|C|1264
7SYO|1|2|A|1265
7SYO|1|2|C|1266
*
7SYO|1|2|G|1516
7SYO|1|2|G|1517
7SYO|1|2|C|1518
7SYO|1|2|U|1519
7SYO|1|2|G|1520
Current chains
- Chain 2
- 18S rRNA
Nearby chains
- Chain Q
- uS19
- Chain T
- uS13
- Chain V
- uS10
- Chain e
- uS14
Coloring options: