J3_7SYQ_005

3D structure

PDB id

7SYQ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the wt IRES and 40S ribosome ternary complex, open conformation. Structure 11(wt)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.8 Å

Loop

Sequence

CCG*UUCCG*CAAAG

Length

13 nucleotides

Bulged bases

7SYQ|1|2|C|1138

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

7SYQ|1|2|C|1094
7SYQ|1|2|C|1095
7SYQ|1|2|G|1096
*
7SYQ|1|2|U|1136
7SYQ|1|2|U|1137
7SYQ|1|2|C|1138
7SYQ|1|2|C|1139
7SYQ|1|2|G|1140
*
7SYQ|1|2|C|1147
7SYQ|1|2|A|1148
7SYQ|1|2|A|1149
7SYQ|1|2|A|1150
7SYQ|1|2|G|1151

Current chains

Chain 2

18S rRNA

Nearby chains

Chain B

uS2 (SA)

Chain O

uS15

Chain W

eS21

Chain X

uS8

Chain b

eS26

Chain c

eS27