J3_7SYT_006

3D structure

PDB id

7SYT (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the wt IRES w/o eIF2 48S initiation complex, closed conformation. Structure 13(wt)

Experimental method

ELECTRON MICROSCOPY

Resolution

4.4 Å

Loop

Sequence

CCAG*CCAGUAA*UGAUUAAG

Length

19 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_7SYT_006 not in the Motif Atlas

Homologous match to J3_8C3A_038

Geometric discrepancy: 0.1726

The information below is about J3_8C3A_038

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_25303.2

Basepair signature

cWW-tSH-tHW-cSH-cSS-tHH-cSS-tWW-F-tHS-cWW-cWW

Number of instances in this motif group

5

Unit IDs

7SYT|1|2|C|1218
7SYT|1|2|C|1219
7SYT|1|2|A|1220
7SYT|1|2|G|1221
*
7SYT|1|2|C|1645
7SYT|1|2|C|1646
7SYT|1|2|A|1647
7SYT|1|2|G|1648
7SYT|1|2|U|1649
7SYT|1|2|A|1650
7SYT|1|2|A|1651
*
7SYT|1|2|U|1673
7SYT|1|2|G|1674
7SYT|1|2|A|1675
7SYT|1|2|U|1676
7SYT|1|2|U|1677
7SYT|1|2|A|1678
7SYT|1|2|A|1679
7SYT|1|2|G|1680

Current chains

Chain 2

18S rRNA

Nearby chains

Chain G

uS7

Chain R

uS9

Chain d

eS28