J3_7SYV_016

3D structure

PDB id

7SYV (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the wt IRES eIF5B-containing pre-48S initiation complex, open conformation. Structure 14(wt)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.9 Å

Loop

Sequence

CUGGC*GGACAAG*CCCGAGAUUG

Length

22 nucleotides

Bulged bases

7SYV|1|2|U|1477

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

7SYV|1|2|C|1391
7SYV|1|2|U|1392
7SYV|1|2|G|1393
7SYV|1|2|G|1394
7SYV|1|2|C|1395
*
7SYV|1|2|G|1450
7SYV|1|2|G|1451
7SYV|1|2|A|1452
7SYV|1|2|C|1453
7SYV|1|2|A|1454
7SYV|1|2|A|1455
7SYV|1|2|G|1456
*
7SYV|1|2|C|1470
7SYV|1|2|C|1471
7SYV|1|2|C|1472
7SYV|1|2|G|1473
7SYV|1|2|A|1474
7SYV|1|2|G|1475
7SYV|1|2|A|1476
7SYV|1|2|U|1477
7SYV|1|2|U|1478
7SYV|1|2|G|1479

Current chains

Chain 2

18S rRNA

Nearby chains

Chain E

uS3

Chain G

uS7

Chain R

uS9

Chain S

eS17

Chain V

uS10

Chain d

eS28

Chain e

eS29

Chain h

RACK1