J3_7SYV_018

3D structure

PDB id

7SYV (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the wt IRES eIF5B-containing pre-48S initiation complex, open conformation. Structure 14(wt)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.9 Å

Loop

Sequence

UGG*UAAGAG*CAUUA

Length

14 nucleotides

Bulged bases

7SYV|1|2|G|921

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_7SYV_018 not in the Motif Atlas

Homologous match to J3_8P9A_072

Geometric discrepancy: 0.1586

The information below is about J3_8P9A_072

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_17385.5

Basepair signature

cWW-F-cWW-cWW-tWH-tHS-cWW

Number of instances in this motif group

5

Unit IDs

7SYV|1|2|U|682
7SYV|1|2|G|683
7SYV|1|2|G|684
*
7SYV|1|2|U|918
7SYV|1|2|A|919
7SYV|1|2|A|920
7SYV|1|2|G|921
7SYV|1|2|A|922
7SYV|1|2|G|923
*
7SYV|1|2|C|1019
7SYV|1|2|A|1020
7SYV|1|2|U|1021
7SYV|1|2|U|1022
7SYV|1|2|A|1023

Current chains

Chain 2

18S rRNA

Nearby chains

Chain I

40S ribosomal protein S7

Chain M

uS17

Chain O

uS15

Chain X

uS8

Chain Y

uS12

Chain c

eS27