J3_7SYX_017
3D structure
- PDB id
- 7SYX (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of the delta dII IRES eIF5B-containing 48S initiation complex, closed conformation. Structure 15(delta dII)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.7 Å
Loop
- Sequence
- GUUCUUAG*CGAGAC*GCAAUAAC
- Length
- 22 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_7SYX_017 not in the Motif Atlas
- Homologous match to J3_8C3A_042
- Geometric discrepancy: 0.5762
- The information below is about J3_8C3A_042
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_67213.1
- Basepair signature
- cWW-F-F-F-F-F-F-F-F-F-F-cWW-cWW-F-F-F-F
- Number of instances in this motif group
- 1
Unit IDs
7SYX|1|2|G|1338
7SYX|1|2|U|1339
7SYX|1|2|U|1340
7SYX|1|2|C|1341
7SYX|1|2|U|1342
7SYX|1|2|U|1343
7SYX|1|2|A|1344
7SYX|1|2|G|1345
*
7SYX|1|2|C|1384
7SYX|1|2|G|1385
7SYX|1|2|A|1386
7SYX|1|2|G|1387
7SYX|1|2|A|1388
7SYX|1|2|C|1389
*
7SYX|1|2|G|1481
7SYX|1|2|C|1482
7SYX|1|2|A|1483
7SYX|1|2|A|1484
7SYX|1|2|U|1485
7SYX|1|2|A|1486
7SYX|1|2|A|1487
7SYX|1|2|C|1488
Current chains
- Chain 2
- 18S rRNA
Nearby chains
- Chain D
- uS5
- Chain E
- uS3
- Chain R
- uS9
- Chain S
- eS17
- Chain V
- uS10
- Chain e
- eS29
- Chain z
- Internal ribosome entry site; IRES
Coloring options: