J3_7TM3_001

3D structure

PDB id

7TM3 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the rabbit 80S ribosome stalled on a 2-TMD Rhodopsin intermediate in complex with the multipass translocon

Experimental method

ELECTRON MICROSCOPY

Resolution

3.25 Å

Loop

Sequence

CAGCG*CGUACG*CCGG

Length

15 nucleotides

Bulged bases

7TM3|1|K|C|159

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

7TM3|1|K|C|112
7TM3|1|K|A|113
7TM3|1|K|G|114
7TM3|1|K|C|115
7TM3|1|K|G|116
*
7TM3|1|K|C|155
7TM3|1|K|G|156
7TM3|1|K|U|157
7TM3|1|K|A|158
7TM3|1|K|C|159
7TM3|1|K|G|160
*
7TM3|1|K|C|275
7TM3|1|K|C|276
7TM3|1|K|G|277
7TM3|1|K|G|278

Current chains

Chain K

28S ribosomal RNA

Nearby chains

Chain G

60S ribosomal protein L7a

Chain L

60S ribosomal protein L13

Chain N

Ribosomal protein L15

Chain h

eL35

Chain i

60S ribosomal protein L36