J3_7TM3_002
3D structure
- PDB id
- 7TM3 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of the rabbit 80S ribosome stalled on a 2-TMD Rhodopsin intermediate in complex with the multipass translocon
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.25 Å
Loop
- Sequence
- UUGAAAAG*CG*CA
- Length
- 12 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_7TM3_002 not in the Motif Atlas
- Geometric match to J3_5J7L_036
- Geometric discrepancy: 0.0987
- The information below is about J3_5J7L_036
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_60031.2
- Basepair signature
- cWW-cWW-cWW-tWH-tSH-F-F
- Number of instances in this motif group
- 7
Unit IDs
7TM3|1|K|U|380
7TM3|1|K|U|381
7TM3|1|K|G|382
7TM3|1|K|A|383
7TM3|1|K|A|384
7TM3|1|K|A|385
7TM3|1|K|A|386
7TM3|1|K|G|387
*
7TM3|1|K|C|414
7TM3|1|K|G|415
*
7TM3|1|v|C|19
7TM3|1|v|A|20
Current chains
- Chain K
- 28S ribosomal RNA
- Chain v
- 5.8S ribosomal RNA
Nearby chains
- Chain B
- Nascent chain
- Chain C
- 60S ribosomal protein L4
- Chain Y
- uL24
- Chain l
- eL39
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