J3_7TM3_007

3D structure

PDB id

7TM3 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the rabbit 80S ribosome stalled on a 2-TMD Rhodopsin intermediate in complex with the multipass translocon

Experimental method

ELECTRON MICROSCOPY

Resolution

3.25 Å

Loop

Sequence

CGAAGUG*CAA*UCUG

Length

14 nucleotides

Bulged bases

7TM3|1|K|A|2396

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_7TM3_007 not in the Motif Atlas

Homologous match to J3_8C3A_006

Geometric discrepancy: 0.1001

The information below is about J3_8C3A_006

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_10154.2

Basepair signature

cWW-tWW-tHW-cWW-tSH-cWW-cWW-F-F

Number of instances in this motif group

3

Unit IDs

7TM3|1|K|C|2393
7TM3|1|K|G|2394
7TM3|1|K|A|2395
7TM3|1|K|A|2396
7TM3|1|K|G|2397
7TM3|1|K|U|2398
7TM3|1|K|G|2399
*
7TM3|1|K|C|2805
7TM3|1|K|A|2806
7TM3|1|K|A|2807
*
7TM3|1|K|U|2819
7TM3|1|K|C|2820
7TM3|1|K|U|2821
7TM3|1|K|G|2822

Current chains

Chain K

28S ribosomal RNA

Nearby chains

Chain R

Ribosomal protein L19

Chain g

60S ribosomal protein L34