J3_7TM3_010

3D structure

PDB id

7TM3 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the rabbit 80S ribosome stalled on a 2-TMD Rhodopsin intermediate in complex with the multipass translocon

Experimental method

ELECTRON MICROSCOPY

Resolution

3.25 Å

Loop

Sequence

AGAUG*CAGU*AGGGUGUAAAU

Length

20 nucleotides

Bulged bases

7TM3|1|K|U|2763

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

7TM3|1|K|A|2551
7TM3|1|K|G|2552
7TM3|1|K|A|2553
7TM3|1|K|U|2554
7TM3|1|K|G|2555
*
7TM3|1|K|C|2572
7TM3|1|K|A|2573
7TM3|1|K|G|2574
7TM3|1|K|U|2575
*
7TM3|1|K|A|2757
7TM3|1|K|G|2758
7TM3|1|K|G|2759
7TM3|1|K|G|2760
7TM3|1|K|U|2761
7TM3|1|K|G|2762
7TM3|1|K|U|2763
7TM3|1|K|A|2764
7TM3|1|K|A|2765
7TM3|1|K|A|2766
7TM3|1|K|U|2767

Current chains

Chain K

28S ribosomal RNA

Nearby chains

Chain Z

60S ribosomal protein L27