J3_7TM3_012

3D structure

PDB id

7TM3 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the rabbit 80S ribosome stalled on a 2-TMD Rhodopsin intermediate in complex with the multipass translocon

Experimental method

ELECTRON MICROSCOPY

Resolution

3.25 Å

Loop

Sequence

CGG*CUGAC*GGACAG

Length

14 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_7TM3_012 not in the Motif Atlas

Geometric match to J3_8VTW_006

Geometric discrepancy: 0.2995

The information below is about J3_8VTW_006

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_89368.4

Basepair signature

cWW-tSH-tHW-F-cWW-tHH-cWW

Number of instances in this motif group

3

Unit IDs

7TM3|1|K|C|3937
7TM3|1|K|G|3938
7TM3|1|K|G|3939
*
7TM3|1|K|C|4074
7TM3|1|K|U|4075
7TM3|1|K|G|4076
7TM3|1|K|A|4077
7TM3|1|K|C|4078
*
7TM3|1|K|G|4168
7TM3|1|K|G|4169
7TM3|1|K|A|4170
7TM3|1|K|C|4171
7TM3|1|K|A|4172
7TM3|1|K|G|4173

Current chains

Chain K

28S ribosomal RNA

Nearby chains

Chain A

Ribosomal protein L8

Chain G

60S ribosomal protein L7a

Chain N

Ribosomal protein L15