J3_7TM3_024

3D structure

PDB id

7TM3 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the rabbit 80S ribosome stalled on a 2-TMD Rhodopsin intermediate in complex with the multipass translocon

Experimental method

ELECTRON MICROSCOPY

Resolution

3.25 Å

Loop

Sequence

AGAAG*CC*GAAAAU

Length

13 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_7TM3_024 not in the Motif Atlas

Homologous match to J3_8P9A_058

Geometric discrepancy: 0.1879

The information below is about J3_8P9A_058

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_12393.2

Basepair signature

cWW-tSH-tHH-F-F-cWW-F-cWW

Number of instances in this motif group

3

Unit IDs

7TM3|1|K|A|2598
7TM3|1|K|G|2599
7TM3|1|K|A|2600
7TM3|1|K|A|2601
7TM3|1|K|G|2602
*
7TM3|1|K|C|2737
7TM3|1|K|C|2738
*
7TM3|1|K|G|2742
7TM3|1|K|A|2743
7TM3|1|K|A|2744
7TM3|1|K|A|2745
7TM3|1|K|A|2746
7TM3|1|K|U|2747

Current chains

Chain K

28S ribosomal RNA

Nearby chains

Chain A

Ribosomal protein L8

Chain g

60S ribosomal protein L34

Chain p

eL43