J3_7TOO_002
3D structure
- PDB id
- 7TOO (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Yeast 80S ribosome bound with the ALS/FTD-associated dipeptide repeat protein GR20
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.7 Å
Loop
- Sequence
- AUGAAAAG*CG*CU
- Length
- 12 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_7TOO_002 not in the Motif Atlas
- Geometric match to J3_5TBW_002
- Geometric discrepancy: 0.0939
- The information below is about J3_5TBW_002
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_69021.1
- Basepair signature
- cWW-tWH-cWW-tSH-F-cWW-F
- Number of instances in this motif group
- 7
Unit IDs
7TOO|1|A25S|A|369
7TOO|1|A25S|U|370
7TOO|1|A25S|G|371
7TOO|1|A25S|A|372
7TOO|1|A25S|A|373
7TOO|1|A25S|A|374
7TOO|1|A25S|A|375
7TOO|1|A25S|G|376
*
7TOO|1|A25S|C|403
7TOO|1|A25S|G|404
*
7TOO|1|A58S|C|19
7TOO|1|A58S|U|20
Current chains
- Chain A25S
- 25S rRNA
- Chain A58S
- 5.8S rRNA
Nearby chains
- Chain AL04
- RPL4A isoform 1
- Chain AL26
- 60S ribosomal protein L26-A
- Chain AL39
- 60S ribosomal protein L39
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