J3_7TOO_006
3D structure
- PDB id
- 7TOO (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Yeast 80S ribosome bound with the ALS/FTD-associated dipeptide repeat protein GR20
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.7 Å
Loop
- Sequence
- UU*AGAAG*CAUUUGA
- Length
- 14 nucleotides
- Bulged bases
- 7TOO|1|A25S|A|1065, 7TOO|1|A25S|U|1095
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_7TOO_006 not in the Motif Atlas
- Homologous match to J3_8P9A_051
- Geometric discrepancy: 0.1907
- The information below is about J3_8P9A_051
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_09667.1
- Basepair signature
- cWW-cWW-F-F-cSS-F-F-cWW
- Number of instances in this motif group
- 2
Unit IDs
7TOO|1|A25S|U|986
7TOO|1|A25S|U|987
*
7TOO|1|A25S|A|1062
7TOO|1|A25S|G|1063
7TOO|1|A25S|A|1064
7TOO|1|A25S|A|1065
7TOO|1|A25S|G|1066
*
7TOO|1|A25S|C|1092
7TOO|1|A25S|A|1093
7TOO|1|A25S|U|1094
7TOO|1|A25S|U|1095
7TOO|1|A25S|U|1096
7TOO|1|A25S|G|1097
7TOO|1|A25S|A|1098
Current chains
- Chain A25S
- 25S rRNA
Nearby chains
- Chain AL07
- 60S ribosomal protein L7-A
- Chain AL21
- 60S ribosomal protein L21-A
- Chain AL29
- RPL29 isoform 1
Coloring options: