J3_7TOO_020
3D structure
- PDB id
- 7TOO (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Yeast 80S ribosome bound with the ALS/FTD-associated dipeptide repeat protein GR20
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.7 Å
Loop
- Sequence
- CGAUAGCGAACAAGUAC*GGAAAG*CUUG
- Length
- 27 nucleotides
- Bulged bases
- 7TOO|1|A25S|U|343, 7TOO|1|A25S|A|351, 7TOO|1|A58S|U|23
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_7TOO_020 not in the Motif Atlas
- Homologous match to J3_8P9A_045
- Geometric discrepancy: 0.0665
- The information below is about J3_8P9A_045
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_30040.2
- Basepair signature
- cWW-tWH-F-cWW-tSS-tHH-cSS-tWH-tSW-tHS-cWW-tWH-F-cSH-tSS-F-F
- Number of instances in this motif group
- 7
Unit IDs
7TOO|1|A25S|C|340
7TOO|1|A25S|G|341
7TOO|1|A25S|A|342
7TOO|1|A25S|U|343
7TOO|1|A25S|A|344
7TOO|1|A25S|G|345
7TOO|1|A25S|C|346
7TOO|1|A25S|G|347
7TOO|1|A25S|A|348
7TOO|1|A25S|A|349
7TOO|1|A25S|C|350
7TOO|1|A25S|A|351
7TOO|1|A25S|A|352
7TOO|1|A25S|G|353
7TOO|1|A25S|U|354
7TOO|1|A25S|A|355
7TOO|1|A25S|C|356
*
7TOO|1|A25S|G|363
7TOO|1|A25S|G|364
7TOO|1|A25S|A|365
7TOO|1|A25S|A|366
7TOO|1|A25S|A|367
7TOO|1|A25S|G|368
*
7TOO|1|A58S|C|21
7TOO|1|A58S|U|22
7TOO|1|A58S|U|23
7TOO|1|A58S|G|24
Current chains
- Chain A25S
- 25S rRNA
- Chain A58S
- 5.8S rRNA
Nearby chains
- Chain AL04
- RPL4A isoform 1
- Chain AL26
- 60S ribosomal protein L26-A
- Chain AL37
- 60S ribosomal protein L37-A
- Chain AL39
- 60S ribosomal protein L39
Coloring options: