J3_7TOO_021

3D structure

PDB id

7TOO (explore in PDB, NAKB, or RNA 3D Hub)

Description

Yeast 80S ribosome bound with the ALS/FTD-associated dipeptide repeat protein GR20

Experimental method

ELECTRON MICROSCOPY

Resolution

2.7 Å

Loop

Sequence

AUGAAAAGAAC*GAGUGAAAAAGUACG*CU

Length

28 nucleotides

Bulged bases

7TOO|1|A25S|A|398, 7TOO|1|A25S|A|402

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_7TOO_021 not in the Motif Atlas

Homologous match to J3_8P9A_047

Geometric discrepancy: 0.0884

The information below is about J3_8P9A_047

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_92134.2

Basepair signature

cWW-cWW-cWW-F-tWH-cSS-tSS-tSH-tSH-tWW-tHH-tWH-tWW-F-F-cSS-cSW-F-tHS-cWW

Number of instances in this motif group

6

Unit IDs

7TOO|1|A25S|A|369
7TOO|1|A25S|U|370
7TOO|1|A25S|G|371
7TOO|1|A25S|A|372
7TOO|1|A25S|A|373
7TOO|1|A25S|A|374
7TOO|1|A25S|A|375
7TOO|1|A25S|G|376
7TOO|1|A25S|A|377
7TOO|1|A25S|A|378
7TOO|1|A25S|C|379
*
7TOO|1|A25S|G|390
7TOO|1|A25S|A|391
7TOO|1|A25S|G|392
7TOO|1|A25S|U|393
7TOO|1|A25S|G|394
7TOO|1|A25S|A|395
7TOO|1|A25S|A|396
7TOO|1|A25S|A|397
7TOO|1|A25S|A|398
7TOO|1|A25S|A|399
7TOO|1|A25S|G|400
7TOO|1|A25S|U|401
7TOO|1|A25S|A|402
7TOO|1|A25S|C|403
7TOO|1|A25S|G|404
*
7TOO|1|A58S|C|19
7TOO|1|A58S|U|20

Current chains

Chain A25S

25S rRNA

Chain A58S

5.8S rRNA

Nearby chains

Chain AL04

RPL4A isoform 1

Chain AL17

60S ribosomal protein L17-A

Chain AL26

60S ribosomal protein L26-A

Chain AL39

60S ribosomal protein L39