J3_7TOO_022

3D structure

PDB id

7TOO (explore in PDB, NAKB, or RNA 3D Hub)

Description

Yeast 80S ribosome bound with the ALS/FTD-associated dipeptide repeat protein GR20

Experimental method

ELECTRON MICROSCOPY

Resolution

2.7 Å

Loop

Sequence

AGAUGG*CGUUUCAAAGG*CCACCAU

Length

24 nucleotides

Bulged bases

7TOO|1|A25S|C|1556, 7TOO|1|A25S|A|1558, 7TOO|1|A25S|C|1581

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_7TOO_022 not in the Motif Atlas

Homologous match to J3_8C3A_053

Geometric discrepancy: 0.5596

The information below is about J3_8C3A_053

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_34234.1

Basepair signature

cWW-tSH-cSH-tWH-F-F-tHS-F-cWW-F-cWW-F-F-F-F

Number of instances in this motif group

1

Unit IDs

7TOO|1|A25S|A|1537
7TOO|1|A25S|G|1538
7TOO|1|A25S|A|1539
7TOO|1|A25S|U|1540
7TOO|1|A25S|G|1541
7TOO|1|A25S|G|1542
*
7TOO|1|A25S|C|1551
7TOO|1|A25S|G|1552
7TOO|1|A25S|U|1553
7TOO|1|A25S|U|1554
7TOO|1|A25S|U|1555
7TOO|1|A25S|C|1556
7TOO|1|A25S|A|1557
7TOO|1|A25S|A|1558
7TOO|1|A25S|A|1559
7TOO|1|A25S|G|1560
7TOO|1|A25S|G|1561
*
7TOO|1|A25S|C|1578
7TOO|1|A25S|C|1579
7TOO|1|A25S|A|1580
7TOO|1|A25S|C|1581
7TOO|1|A25S|C|1582
7TOO|1|A25S|A|1583
7TOO|1|A25S|U|1584

Current chains

Chain A25S

25S rRNA

Nearby chains

Chain A58S

5.8S ribosomal RNA; 5.8S rRNA

Chain AL02

60S ribosomal protein L2-A

Chain AL08

60S ribosomal protein L8-A

Chain AL15

60S ribosomal protein L15-A

Chain AL25

60S ribosomal protein L25

Chain AL37

60S ribosomal protein L37-A