J3_7TOP_001
3D structure
- PDB id
- 7TOP (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Yeast 80S ribosome bound with the ALS/FTD-associated dipeptide repeat protein PR20
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.4 Å
Loop
- Sequence
- CAAAUUUGAAA*UAAUUUGGAG*CGAAG
- Length
- 26 nucleotides
- Bulged bases
- 7TOP|1|A25S|G|156
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_7TOP_001 not in the Motif Atlas
- Homologous match to J3_8C3A_001
- Geometric discrepancy: 0.0825
- The information below is about J3_8C3A_001
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_88489.1
- Basepair signature
- cWW-F-F-F-F-F-F-F-F-tWH-F-F-tHS-cWW-cWW-F-F
- Number of instances in this motif group
- 2
Unit IDs
7TOP|1|A25S|C|113
7TOP|1|A25S|A|114
7TOP|1|A25S|A|115
7TOP|1|A25S|A|116
7TOP|1|A25S|U|117
7TOP|1|A25S|U|118
7TOP|1|A25S|U|119
7TOP|1|A25S|G|120
7TOP|1|A25S|A|121
7TOP|1|A25S|A|122
7TOP|1|A25S|A|123
*
7TOP|1|A25S|U|149
7TOP|1|A25S|A|150
7TOP|1|A25S|A|151
7TOP|1|A25S|U|152
7TOP|1|A25S|U|153
7TOP|1|A25S|U|154
7TOP|1|A25S|G|155
7TOP|1|A25S|G|156
7TOP|1|A25S|A|157
7TOP|1|A25S|G|158
*
7TOP|1|A25S|C|263
7TOP|1|A25S|G|264
7TOP|1|A25S|A|265
7TOP|1|A25S|A|266
7TOP|1|A25S|G|267
Current chains
- Chain A25S
- 25S rRNA
Nearby chains
- Chain AL08
- 60S ribosomal protein L8-A
- Chain AL13
- 60S ribosomal protein L13-A
- Chain AL15
- 60S ribosomal protein L15-A
- Chain AL35
- 60S ribosomal protein L35-A
- Chain AL36
- 60S ribosomal protein L36-A
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