J3_7TOP_005
3D structure
- PDB id
- 7TOP (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Yeast 80S ribosome bound with the ALS/FTD-associated dipeptide repeat protein PR20
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.4 Å
Loop
- Sequence
- AUAG*CGUAG*UCGAAU
- Length
- 15 nucleotides
- Bulged bases
- 7TOP|1|A25S|A|896
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_7TOP_005 not in the Motif Atlas
- Homologous match to J3_8P9A_050
- Geometric discrepancy: 0.1017
- The information below is about J3_8P9A_050
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_21998.1
- Basepair signature
- cWW-tSH-F-F-tHS-cWW-cWW-F-F
- Number of instances in this motif group
- 1
Unit IDs
7TOP|1|A25S|A|828
7TOP|1|A25S|U|829
7TOP|1|A25S|A|830
7TOP|1|A25S|G|831
*
7TOP|1|A25S|C|863
7TOP|1|A25S|G|864
7TOP|1|A25S|U|865
7TOP|1|A25S|A|866
7TOP|1|A25S|G|867
*
7TOP|1|A25S|U|892
7TOP|1|A25S|C|893
7TOP|1|A25S|G|894
7TOP|1|A25S|A|895
7TOP|1|A25S|A|896
7TOP|1|A25S|U|897
Current chains
- Chain A25S
- 25S rRNA
Nearby chains
- Chain AL02
- 60S ribosomal protein L2-A
- Chain AL19
- 60S ribosomal protein L19-A
- Chain AL34
- 60S ribosomal protein L34-A
Coloring options: