J3_7TOP_008

3D structure

PDB id

7TOP (explore in PDB, NAKB, or RNA 3D Hub)

Description

Yeast 80S ribosome bound with the ALS/FTD-associated dipeptide repeat protein PR20

Experimental method

ELECTRON MICROSCOPY

Resolution

2.4 Å

Loop

Sequence

UGAAGUG*CAA*UCUA

Length

14 nucleotides

Bulged bases

7TOP|1|A25S|A|1482

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_7TOP_008 not in the Motif Atlas

Homologous match to J3_8C3A_006

Geometric discrepancy: 0.1183

The information below is about J3_8C3A_006

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_10154.2

Basepair signature

cWW-tWW-tHW-cWW-tSH-cWW-cWW-F-F

Number of instances in this motif group

3

Unit IDs

7TOP|1|A25S|U|1479
7TOP|1|A25S|G|1480
7TOP|1|A25S|A|1481
7TOP|1|A25S|A|1482
7TOP|1|A25S|G|1483
7TOP|1|A25S|U|1484
7TOP|1|A25S|G|1485
*
7TOP|1|A25S|C|1857
7TOP|1|A25S|A|1858
7TOP|1|A25S|A|1859
*
7TOP|1|A25S|U|1871
7TOP|1|A25S|C|1872
7TOP|1|A25S|U|1873
7TOP|1|A25S|A|1874

Current chains

Chain A25S

25S rRNA

Nearby chains

Chain AL19

60S ribosomal protein L19-A

Chain AL34

60S ribosomal protein L34-A