J3_7TOP_010
3D structure
- PDB id
- 7TOP (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Yeast 80S ribosome bound with the ALS/FTD-associated dipeptide repeat protein PR20
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.4 Å
Loop
- Sequence
- UCGAUC*GGAAU*AA
- Length
- 13 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_7TOP_010 not in the Motif Atlas
- Homologous match to J3_8P9A_055
- Geometric discrepancy: 0.0954
- The information below is about J3_8P9A_055
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_31965.2
- Basepair signature
- cWW-F-cWW-F-F-F-F-F-cWW-F
- Number of instances in this motif group
- 6
Unit IDs
7TOP|1|A25S|U|1526
7TOP|1|A25S|C|1527
7TOP|1|A25S|G|1528
7TOP|1|A25S|A|1529
7TOP|1|A25S|U|1530
7TOP|1|A25S|C|1531
*
7TOP|1|A25S|G|1591
7TOP|1|A25S|G|1592
7TOP|1|A25S|A|1593
7TOP|1|A25S|A|1594
7TOP|1|A25S|U|1595
*
7TOP|1|A25S|A|1612
7TOP|1|A25S|A|1613
Current chains
- Chain A25S
- 25S rRNA
Nearby chains
- Chain A58S
- 5.8S ribosomal RNA; 5.8S rRNA
- Chain AL25
- 60S ribosomal protein L25
- Chain AL34
- 60S ribosomal protein L34-A
- Chain AL38
- RPL38 isoform 1
- Chain AL39
- 60S ribosomal protein L39
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