3D structure

PDB id
7TOP (explore in PDB, NAKB, or RNA 3D Hub)
Description
Yeast 80S ribosome bound with the ALS/FTD-associated dipeptide repeat protein PR20
Experimental method
ELECTRON MICROSCOPY
Resolution
2.4 Å

Loop

Sequence
CA*UAACU*AG
Length
9 nucleotides
Bulged bases
None detected
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
J3_7TOP_011 not in the Motif Atlas
Geometric match to J3_5TBW_090
Geometric discrepancy: 0.1456
The information below is about J3_5TBW_090
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
J3_16991.1
Basepair signature
cWW-F-cWW-F-F-cWW
Number of instances in this motif group
3

Unit IDs

7TOP|1|A25S|C|1631
7TOP|1|A25S|A|1632
*
7TOP|1|A25S|U|1641
7TOP|1|A25S|A|1642
7TOP|1|A25S|A|1643
7TOP|1|A25S|C|1644
7TOP|1|A25S|U|1645
*
7TOP|1|A25S|A|1810
7TOP|1|A25S|G|1811

Current chains

Chain A25S
25S rRNA

Nearby chains

Chain AL27
60S ribosomal protein L27-A
Chain AL34
60S ribosomal protein L34-A

Coloring options:


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