J3_7TOP_019

3D structure

PDB id

7TOP (explore in PDB, NAKB, or RNA 3D Hub)

Description

Yeast 80S ribosome bound with the ALS/FTD-associated dipeptide repeat protein PR20

Experimental method

ELECTRON MICROSCOPY

Resolution

2.4 Å

Loop

Sequence

CGAUAGCGAACAAGUAC*GGAAAG*CUUG

Length

27 nucleotides

Bulged bases

7TOP|1|A25S|U|343, 7TOP|1|A25S|A|351, 7TOP|1|A58S|U|23

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_7TOP_019 not in the Motif Atlas

Homologous match to J3_8P9A_045

Geometric discrepancy: 0.0551

The information below is about J3_8P9A_045

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_07616.1

Basepair signature

cWW-cSS-tSS-tSW-tHW-cWW-tWH-F-F-tHH-tSS-tWH-F-tHS-cWW-F-cSH

Number of instances in this motif group

10

Unit IDs

7TOP|1|A25S|C|340
7TOP|1|A25S|G|341
7TOP|1|A25S|A|342
7TOP|1|A25S|U|343
7TOP|1|A25S|A|344
7TOP|1|A25S|G|345
7TOP|1|A25S|C|346
7TOP|1|A25S|G|347
7TOP|1|A25S|A|348
7TOP|1|A25S|A|349
7TOP|1|A25S|C|350
7TOP|1|A25S|A|351
7TOP|1|A25S|A|352
7TOP|1|A25S|G|353
7TOP|1|A25S|U|354
7TOP|1|A25S|A|355
7TOP|1|A25S|C|356
*
7TOP|1|A25S|G|363
7TOP|1|A25S|G|364
7TOP|1|A25S|A|365
7TOP|1|A25S|A|366
7TOP|1|A25S|A|367
7TOP|1|A25S|G|368
*
7TOP|1|A58S|C|21
7TOP|1|A58S|U|22
7TOP|1|A58S|U|23
7TOP|1|A58S|G|24

Current chains

Chain A25S

25S rRNA

Chain A58S

5.8S rRNA

Nearby chains

Chain AL04

RPL4A isoform 1

Chain AL26

60S ribosomal protein L26-A

Chain AL37

60S ribosomal protein L37-A

Chain AL39

60S ribosomal protein L39

Chain PR

PR20