J3_7TOP_023

3D structure

PDB id

7TOP (explore in PDB, NAKB, or RNA 3D Hub)

Description

Yeast 80S ribosome bound with the ALS/FTD-associated dipeptide repeat protein PR20

Experimental method

ELECTRON MICROSCOPY

Resolution

2.4 Å

Loop

Sequence

AGACG*CC*GAAAAU

Length

13 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_7TOP_023 not in the Motif Atlas

Homologous match to J3_8P9A_058

Geometric discrepancy: 0.0812

The information below is about J3_8P9A_058

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_12393.2

Basepair signature

cWW-tSH-tHH-F-F-cWW-F-cWW

Number of instances in this motif group

3

Unit IDs

7TOP|1|A25S|A|1654
7TOP|1|A25S|G|1655
7TOP|1|A25S|A|1656
7TOP|1|A25S|C|1657
7TOP|1|A25S|G|1658
*
7TOP|1|A25S|C|1791
7TOP|1|A25S|C|1792
*
7TOP|1|A25S|G|1796
7TOP|1|A25S|A|1797
7TOP|1|A25S|A|1798
7TOP|1|A25S|A|1799
7TOP|1|A25S|A|1800
7TOP|1|A25S|U|1801

Current chains

Chain A25S

25S rRNA

Nearby chains

Chain AL02

60S ribosomal protein L2-A

Chain AL34

60S ribosomal protein L34-A

Chain AL43

60S ribosomal protein L43-A