J3_7TOP_029

3D structure

PDB id

7TOP (explore in PDB, NAKB, or RNA 3D Hub)

Description

Yeast 80S ribosome bound with the ALS/FTD-associated dipeptide repeat protein PR20

Experimental method

ELECTRON MICROSCOPY

Resolution

2.4 Å

Loop

Sequence

GAC*GCUAAGG*CAC

Length

13 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_7TOP_029 not in the Motif Atlas

Homologous match to J3_8P9A_052

Geometric discrepancy: 0.2578

The information below is about J3_8P9A_052

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_28621.5

Basepair signature

cWW-tSS-cSS-tSH-cWW-cWW-tWW-F-F

Number of instances in this motif group

7

Unit IDs

7TOP|1|A25S|G|1230
7TOP|1|A25S|A|1231
7TOP|1|A25S|C|1232
*
7TOP|1|A25S|G|1256
7TOP|1|A25S|C|1257
7TOP|1|A25S|U|1258
7TOP|1|A25S|A|1259
7TOP|1|A25S|A|1260
7TOP|1|A25S|G|1261
7TOP|1|A25S|G|1262
*
7TOP|1|A25S|C|1277
7TOP|1|A25S|A|1278
7TOP|1|A25S|C|1279

Current chains

Chain A25S

25S rRNA

Nearby chains

Chain AL12

Ribosomal protein L12

Chain ALP0

60S acidic ribosomal protein P0