J3_7TOP_030
3D structure
- PDB id
- 7TOP (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Yeast 80S ribosome bound with the ALS/FTD-associated dipeptide repeat protein PR20
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.4 Å
Loop
- Sequence
- AGCU*ACGUUCUAGCAUUCAAG*UGAU
- Length
- 25 nucleotides
- Bulged bases
- 7TOP|1|A25S|G|2549, 7TOP|1|A25S|U|2550, 7TOP|1|A25S|U|2551, 7TOP|1|A25S|C|2552, 7TOP|1|A25S|U|2553, 7TOP|1|A25S|A|2554, 7TOP|1|A25S|U|2558, 7TOP|1|A25S|U|2559, 7TOP|1|A25S|C|2560
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_7TOP_030 not in the Motif Atlas
- Homologous match to J3_8CRE_020
- Geometric discrepancy: 0.1772
- The information below is about J3_8CRE_020
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_28639.1
- Basepair signature
- cWW-tSS-F-cWW-F-cWW-F
- Number of instances in this motif group
- 2
Unit IDs
7TOP|1|A25S|A|2529
7TOP|1|A25S|G|2530
7TOP|1|A25S|C|2531
7TOP|1|A25S|U|2532
*
7TOP|1|A25S|A|2547
7TOP|1|A25S|C|2548
7TOP|1|A25S|G|2549
7TOP|1|A25S|U|2550
7TOP|1|A25S|U|2551
7TOP|1|A25S|C|2552
7TOP|1|A25S|U|2553
7TOP|1|A25S|A|2554
7TOP|1|A25S|G|2555
7TOP|1|A25S|C|2556
7TOP|1|A25S|A|2557
7TOP|1|A25S|U|2558
7TOP|1|A25S|U|2559
7TOP|1|A25S|C|2560
7TOP|1|A25S|A|2561
7TOP|1|A25S|A|2562
7TOP|1|A25S|G|2563
*
7TOP|1|A25S|U|2578
7TOP|1|A25S|G|2579
7TOP|1|A25S|A|2580
7TOP|1|A25S|U|2581
Current chains
- Chain A25S
- 25S rRNA
Nearby chains
- Chain AL02
- 60S ribosomal protein L2-A
- Chain AL08
- 60S ribosomal protein L8-A
- Chain AL25
- 60S ribosomal protein L25
- Chain AL27
- 60S ribosomal protein L27-A
- Chain AL30
- 60S ribosomal protein L30
- Chain AL34
- 60S ribosomal protein L34-A
- Chain AL43
- 60S ribosomal protein L43-A
Coloring options: