J3_7TOQ_007
3D structure
- PDB id
- 7TOQ (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Mammalian 80S ribosome bound with the ALS/FTD-associated dipeptide repeat protein poly-PR
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.1 Å
Loop
- Sequence
- CUUAAUUU*GGGAAACCUCAC*GGCUG
- Length
- 25 nucleotides
- Bulged bases
- 7TOQ|1|A18S|G|1256, 7TOQ|1|A18S|A|1258
- QA status
- Unknown status
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_7TOQ_007 not in the Motif Atlas
- Homologous match to J3_8C3A_040
- Geometric discrepancy: 0.2134
- The information below is about J3_8C3A_040
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_83516.3
- Basepair signature
- cWW-F-F-F-tWW-F-tSH-tSS-cSS-F-F-F-F-F-cWW-cWW-F-F-F
- Number of instances in this motif group
- 4
Unit IDs
7TOQ|1|A18S|C|1237
7TOQ|1|A18S|U|1238
7TOQ|1|A18S|U|1239
7TOQ|1|A18S|A|1240
7TOQ|1|A18S|A|1241
7TOQ|1|A18S|U|1242
7TOQ|1|A18S|U|1243
7TOQ|1|A18S|U|1244
*
7TOQ|1|A18S|G|1255
7TOQ|1|A18S|G|1256
7TOQ|1|A18S|G|1257
7TOQ|1|A18S|A|1258
7TOQ|1|A18S|A|1259
7TOQ|1|A18S|A|1260
7TOQ|1|A18S|C|1261
7TOQ|1|A18S|C|1262
7TOQ|1|A18S|U|1263
7TOQ|1|A18S|C|1264
7TOQ|1|A18S|A|1265
7TOQ|1|A18S|C|1266
*
7TOQ|1|A18S|G|1516
7TOQ|1|A18S|G|1517
7TOQ|1|A18S|C|1518
7TOQ|1|A18S|U|1519
7TOQ|1|A18S|G|1520
Current chains
- Chain A18S
- 18S rRNA
Nearby chains
- Chain AS15
- 40S ribosomal protein S15
- Chain AS18
- 40S ribosomal protein S18
- Chain AS20
- 40S ribosomal protein S20
- Chain AS29
- 40S ribosomal protein S29
Coloring options: