J3_7TOQ_024
3D structure
- PDB id
- 7TOQ (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Mammalian 80S ribosome bound with the ALS/FTD-associated dipeptide repeat protein poly-PR
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.1 Å
Loop
- Sequence
- GGGG*CGCUUCUGGCGCCAAG*CGAC
- Length
- 24 nucleotides
- Bulged bases
- 7TOQ|1|A25S|C|4116, 7TOQ|1|A25S|U|4117, 7TOQ|1|A25S|U|4118, 7TOQ|1|A25S|G|4121
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_7TOQ_024 not in the Motif Atlas
- Homologous match to J3_8C3A_009
- Geometric discrepancy: 0.3446
- The information below is about J3_8C3A_009
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_02167.1
- Basepair signature
- cWW-F-F-F-F-F-cWW-F-tHH-tHS-cWW
- Number of instances in this motif group
- 1
Unit IDs
7TOQ|1|A25S|G|4091
7TOQ|1|A25S|G|4092
7TOQ|1|A25S|G|4093
7TOQ|1|A25S|G|4094
*
7TOQ|1|A25S|C|4114
7TOQ|1|A25S|G|4115
7TOQ|1|A25S|C|4116
7TOQ|1|A25S|U|4117
7TOQ|1|A25S|U|4118
7TOQ|1|A25S|C|4119
7TOQ|1|A25S|U|4120
7TOQ|1|A25S|G|4121
7TOQ|1|A25S|G|4122
7TOQ|1|A25S|C|4123
7TOQ|1|A25S|G|4124
7TOQ|1|A25S|C|4125
7TOQ|1|A25S|C|4126
7TOQ|1|A25S|A|4127
7TOQ|1|A25S|A|4128
7TOQ|1|A25S|G|4129
*
7TOQ|1|A25S|C|4155
7TOQ|1|A25S|G|4156
7TOQ|1|A25S|A|4157
7TOQ|1|A25S|C|4158
Current chains
- Chain A25S
- 28S rRNA
Nearby chains
- Chain AL02
- uL2
- Chain AL08
- eL8
- Chain AL25
- uL23
- Chain AL27
- 60S ribosomal protein L27
- Chain AL30
- eL30
- Chain AL34
- 60S ribosomal protein L34
- Chain AL43
- 60S ribosomal protein L37a
Coloring options: