J3_7TOQ_028
3D structure
- PDB id
- 7TOQ (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Mammalian 80S ribosome bound with the ALS/FTD-associated dipeptide repeat protein poly-PR
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.1 Å
Loop
- Sequence
- ACGCAGCUAGCU*AUU*ACACU
- Length
- 20 nucleotides
- Bulged bases
- 7TOQ|1|A58S|U|63
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_7TOQ_028 not in the Motif Atlas
- Geometric match to J3_4WF9_001
- Geometric discrepancy: 0.2642
- The information below is about J3_4WF9_001
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_47707.1
- Basepair signature
- cWW-F-F-F-F-F-cWW-F-cWW-F-F-cSH-cSH-cWW-F
- Number of instances in this motif group
- 1
Unit IDs
7TOQ|1|A58S|A|44
7TOQ|1|A58S|C|45
7TOQ|1|A58S|G|46
7TOQ|1|A58S|C|47
7TOQ|1|A58S|A|48
7TOQ|1|A58S|G|49
7TOQ|1|A58S|C|50
7TOQ|1|A58S|U|51
7TOQ|1|A58S|A|52
7TOQ|1|A58S|G|53
7TOQ|1|A58S|C|54
7TOQ|1|A58S|U|55
*
7TOQ|1|A58S|A|62
7TOQ|1|A58S|U|63
7TOQ|1|A58S|U|64
*
7TOQ|1|A58S|A|95
7TOQ|1|A58S|C|96
7TOQ|1|A58S|A|97
7TOQ|1|A58S|C|98
7TOQ|1|A58S|U|99
Current chains
- Chain A58S
- 5.8S rRNA
Nearby chains
- Chain A25S
- Large subunit ribosomal RNA; LSU rRNA
- Chain AL25
- uL23
- Chain AL35
- 60S ribosomal protein L35
- Chain AL37
- 60S ribosomal protein L37
- Chain AL39
- eL39
Coloring options: