J3_7TOQ_033

3D structure

PDB id

7TOQ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Mammalian 80S ribosome bound with the ALS/FTD-associated dipeptide repeat protein poly-PR

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

UUGAAAAGAAC*GAGUUCAAGAGGGCG*CA

Length

28 nucleotides

Bulged bases

7TOQ|1|A25S|G|409, 7TOQ|1|A25S|G|413

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_7TOQ_033 not in the Motif Atlas

Homologous match to J3_8P9A_047

Geometric discrepancy: 0.3006

The information below is about J3_8P9A_047

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_17917.1

Basepair signature

cWW-tWH-cSS-cWW-tSH-tHH-cWW-F-F-tWW-tSS-cSS-tWW-tSH-tWH-cSW-F-tHS-cWW-F

Number of instances in this motif group

9

Unit IDs

7TOQ|1|A25S|U|380
7TOQ|1|A25S|U|381
7TOQ|1|A25S|G|382
7TOQ|1|A25S|A|383
7TOQ|1|A25S|A|384
7TOQ|1|A25S|A|385
7TOQ|1|A25S|A|386
7TOQ|1|A25S|G|387
7TOQ|1|A25S|A|388
7TOQ|1|A25S|A|389
7TOQ|1|A25S|C|390
*
7TOQ|1|A25S|G|401
7TOQ|1|A25S|A|402
7TOQ|1|A25S|G|403
7TOQ|1|A25S|U|404
7TOQ|1|A25S|U|405
7TOQ|1|A25S|C|406
7TOQ|1|A25S|A|407
7TOQ|1|A25S|A|408
7TOQ|1|A25S|G|409
7TOQ|1|A25S|A|410
7TOQ|1|A25S|G|411
7TOQ|1|A25S|G|412
7TOQ|1|A25S|G|413
7TOQ|1|A25S|C|414
7TOQ|1|A25S|G|415
*
7TOQ|1|A58S|C|19
7TOQ|1|A58S|A|20

Current chains

Chain A25S

28S rRNA

Chain A58S

5.8S rRNA

Nearby chains

Chain AL04

60S ribosomal protein L4

Chain AL17

60S ribosomal protein L17

Chain AL26

60S ribosomal protein L26

Chain AL39

eL39