J3_7TOQ_035

3D structure

PDB id

7TOQ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Mammalian 80S ribosome bound with the ALS/FTD-associated dipeptide repeat protein poly-PR

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

UCC*GCCGGGC*GGCCACGCGUCCCCCGCG

Length

28 nucleotides

Bulged bases

7TOQ|1|A25S|C|1237, 7TOQ|1|A25S|G|1271, 7TOQ|1|A25S|C|1272

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

7TOQ|1|A25S|U|982
7TOQ|1|A25S|C|983
7TOQ|1|A25S|C|984
*
7TOQ|1|A25S|G|1070
7TOQ|1|A25S|C|1071
7TOQ|1|A25S|C|1072
7TOQ|1|A25S|G|1073
7TOQ|1|A25S|G|1074
7TOQ|1|A25S|G|1075
7TOQ|1|A25S|C|1076
*
7TOQ|1|A25S|G|1234
7TOQ|1|A25S|G|1235
7TOQ|1|A25S|C|1236
7TOQ|1|A25S|C|1237
7TOQ|1|A25S|A|1238
7TOQ|1|A25S|C|1239
7TOQ|1|A25S|G|1244
7TOQ|1|A25S|C|1245
7TOQ|1|A25S|G|1246
7TOQ|1|A25S|U|1247
7TOQ|1|A25S|C|1248
7TOQ|1|A25S|C|1249
7TOQ|1|A25S|C|1250
7TOQ|1|A25S|C|1251
7TOQ|1|A25S|C|1252
7TOQ|1|A25S|G|1271
7TOQ|1|A25S|C|1272
7TOQ|1|A25S|G|1273

Current chains

Chain A25S

28S rRNA

Nearby chains

Chain AL04

60S ribosomal protein L4

Chain AL06

60S ribosomal protein L6

Chain AL07

uL30

Chain AL29

eL29